DreALTA0028445-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000036913 | st6galnac6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-060322-7]
Coordinates
chr21:3669441-3670111:-
Coord C1 exon
chr21:3670004-3670111
Coord A exon
NA
Coord C2 exon
chr21:3669441-3669541
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
ACTTTATTTTCCTAAAGCAGACG
3' ss Score
4.54
Exon sequences
Seq C1 exon
AAAAAAGTCTCAGTCCTGGTTAAGCACCGGCTGGTTCACCATGGTGATCGCCATAGAGATGTGTGACAACATAAAGGTTTATGGGATGGTGCCACCAAACTATTGTGG
Seq A exon
NA
Seq C2 exon
ACGTCCTCAACCCAAGCGGATGCCATATCACTACTACAAACCCAGAGGTCCAGACGAGTGCGTGACGTACCTCCAGAACGAGAGGGGGCTCCGCGGCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036913-7-11,7-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(12.9=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(23.7=91.9)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGTGATCGCCATAGAGA
R:
ATATGGCATCCGCTTGGGTTG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]