DreALTA0028445-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000036913 | st6galnac6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-060322-7]
Coordinates
chr21:3669441-3670111:-
Coord C1 exon
chr21:3670004-3670111
Coord A exon
chr21:3669542-3669544
Coord C2 exon
chr21:3669441-3669541
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CATACTTTATTTTCCTAAAGCAG
3' ss Score
4.19
Exon sequences
Seq C1 exon
AAAAAAGTCTCAGTCCTGGTTAAGCACCGGCTGGTTCACCATGGTGATCGCCATAGAGATGTGTGACAACATAAAGGTTTATGGGATGGTGCCACCAAACTATTGTGG
Seq A exon
CAG
Seq C2 exon
ACGTCCTCAACCCAAGCGGATGCCATATCACTACTACAAACCCAGAGGTCCAGACGAGTGCGTGACGTACCTCCAGAACGAGAGGGGGCTCCGCGGCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036913-7-11,7-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(12.9=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(23.7=91.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGTGATCGCCATAGAGA
R:
ATATGGCATCCGCTTGGGTTG
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]