GgaALTA1030835-3/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000005298 | ST6GALNAC6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:HGNC Symbol;Acc:HGNC:23364]
Coordinates
chr17:4874161-4874454:+
Coord C1 exon
chr17:4874161-4874268
Coord A exon
chr17:4874341-4874353
Coord C2 exon
chr17:4874354-4874454
Length
13 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AGCCCATGGTCTGCTTGTAGTCA
3' ss Score
3.81
Exon sequences
Seq C1 exon
AGAGAAGTCACGCTCGTGGTTGAGCACAGGTTGGTTCACCATGGGGATTGCGGTGGAGCTGTGCGACGCCGTCCACGTCTACGGCATGGTGCCCCCCAACTACTGCAG
Seq A exon
TCAGCGCCCGCAG
Seq C2 exon
CCCCGCCGCATGGCGTACCACTACTACGAGCCCAAGGGCCCCGATGAGTGCACCACCTACATCCACAACGAGCGCAGCCGCCGCGGCAACCACCACCGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005298-9-18,9-17,9-16-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=FE(14.8=100)
A:
NA
C2:
PF0077713=Glyco_transf_29=PD(20.5=78.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCACCATGGGGATTGC
R:
GCTCGTAGTAGTGGTACGCCA
Band lengths:
108-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]