DreALTA0028667-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000021455 | strbp
Description
spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
Coordinates
chr10:9898004-9900432:-
Coord C1 exon
chr10:9900349-9900432
Coord A exon
NA
Coord C2 exon
chr10:9898004-9898212
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCCTCTTTCCCTTCCAGCAGTTC
3' ss Score
8.35
Exon sequences
Seq C1 exon
GTCTAGGGCTGAAGAGACCTTATGAAGATGGTCTGATGGATGACAAAGACCTCATCAAAAAGATGAAACGCAACCTGAGAAAAG
Seq A exon
NA
Seq C2 exon
TTCTTGACAGTAAAGCAATAGACTCCAATCAGCCTATGAACGCTCTGATGCGCTTGAACCAGATCCGGCCGGGGCTGCAGTACAAACTGCTGTCTCAGTCAGGTCCGGTTCACGCCCCCGTCTTCACCATGTCCGTAGACGTCGACGGCACTGTTTACGAAGCCTCGGGATCCTCCAAGAAGACCGCCAAGTTGCACGTGGCAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021455-20-19,20-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGAAACGCAACCTGAGA
R:
GGATCTGGTTCAAGCGCATCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]