DreALTA0028667-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000021455 | strbp
Description
spermatid perinuclear RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030729-18]
Coordinates
chr10:9898004-9900432:-
Coord C1 exon
chr10:9900349-9900432
Coord A exon
chr10:9898213-9898215
Coord C2 exon
chr10:9898004-9898212
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTGTCCTCTTTCCCTTCCAGCAG
3' ss Score
11.61
Exon sequences
Seq C1 exon
GTCTAGGGCTGAAGAGACCTTATGAAGATGGTCTGATGGATGACAAAGACCTCATCAAAAAGATGAAACGCAACCTGAGAAAAG
Seq A exon
CAG
Seq C2 exon
TTCTTGACAGTAAAGCAATAGACTCCAATCAGCCTATGAACGCTCTGATGCGCTTGAACCAGATCCGGCCGGGGCTGCAGTACAAACTGCTGTCTCAGTCAGGTCCGGTTCACGCCCCCGTCTTCACCATGTCCGTAGACGTCGACGGCACTGTTTACGAAGCCTCGGGATCCTCCAAGAAGACCGCCAAGTTGCACGTGGCAGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021455-20-19,20-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.6=81.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATGAAACGCAACCTGAGA
R:
GGATCTGGTTCAAGCGCATCA
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]