DreALTA0028737-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000007603 | stxbp2
Description
syntaxin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2482]
Coordinates
chr3:53013245-53017250:+
Coord C1 exon
chr3:53013245-53013330
Coord A exon
NA
Coord C2 exon
chr3:53017093-53017250
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
CTTGAATCTCATTGCAGCAGCGC
3' ss Score
1.06
Exon sequences
Seq C1 exon
AATATCATTGATGACAAATGTGACAGGAAGCAGTGGCCATTCCTGTCTGAGCCTGCACCCATCACCACCACCGCAACTACAGTCAG
Seq A exon
NA
Seq C2 exon
CGCACGGTTTGGACACTGGCACAAGAACAAGTCTGCCACAGAGTACCGCAGTGGCCCTCGCCTCATCATCTTCGTGATTGGAGGAGTCACACATTCAGAGATGCGCTGCGCTTATGAAGTGACCCGCGCCACTGAGGGCAAATGGGAGGTTCTGATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007603-19-19,19-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(5.0=100)
A:
NA
C2:
PF0099518=Sec1=FE(9.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGACAGGAAGCAGTGGC
R:
TCTTGTGCCAGTGTCCAAACC
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]