MmuALTA0017538-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000004626 | Stxbp2
Description
syntaxin binding protein 2 [Source:MGI Symbol;Acc:MGI:107370]
Coordinates
chr8:3641735-3641937:+
Coord C1 exon
chr8:3641735-3641820
Coord A exon
NA
Coord C2 exon
chr8:3641898-3641937
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTACCCATCACCCCAGCAGCGC
3' ss Score
3.22
Exon sequences
Seq C1 exon
GATGTGGTGGAGGACCGGCTAGACCGAAAGCTGTGGCCCTTTGTGTCTGACCCTGCCCCTGTGCCTAGCTCCCAGGCAGCTGTCAG
Seq A exon
NA
Seq C2 exon
CGCTCGCTTTGGCCACTGGCACAAAAACAAAGCTGGAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004626-43-42,43-41-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(26.1=100)
A:
NA
C2:
PF0099518=Sec1=FE(9.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCCCTTTGTGTCTGAC
R:
CCAGCTTTGTTTTTGTGCCAGT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types