DreALTA0029213-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39424449-39424810:+
Coord C1 exon
chr7:39424449-39424535
Coord A exon
NA
Coord C2 exon
chr7:39424722-39424810
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
TGCTCATTTTTTAGATGCAGGCT
3' ss Score
1.38
Exon sequences
Seq C1 exon
AGCTGTATGACATCTGCCTGGCAAGAGCGAAGGAGAAGTGGAATGCCTTTGTAGCCCCAACAGCTGCTGTGGAAACTGAAAGTGAAG
Seq A exon
NA
Seq C2 exon
GCTTGTCTCATGCTGATCGAGAGGCCAGTCTAGAACTAATCAAGTTAGACATTTCCAGAACATTTCCCAATCTCTGTATATTCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520-12-15,12-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(15.2=100),PF0056613=RabGAP-TBC=FE(12.6=100)
A:
NA
C2:
PF085986=Sds3=PD(6.3=37.5),PF0056613=RabGAP-TBC=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAAGAGCGAAGGAGAAG
R:
TAGACTGGCCTCTCGATCAGC
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]