DreALTA0029213-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000003520 | tbc1d14
Description
TBC1 domain family, member 14 [Source:ZFIN;Acc:ZDB-GENE-030131-6136]
Coordinates
chr7:39424449-39424810:+
Coord C1 exon
chr7:39424449-39424535
Coord A exon
chr7:39424716-39424721
Coord C2 exon
chr7:39424722-39424810
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
AACTACTGCTCATTTTTTAGATG
3' ss Score
7.55
Exon sequences
Seq C1 exon
AGCTGTATGACATCTGCCTGGCAAGAGCGAAGGAGAAGTGGAATGCCTTTGTAGCCCCAACAGCTGCTGTGGAAACTGAAAGTGAAG
Seq A exon
ATGCAG
Seq C2 exon
GCTTGTCTCATGCTGATCGAGAGGCCAGTCTAGAACTAATCAAGTTAGACATTTCCAGAACATTTCCCAATCTCTGTATATTCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003520-12-15,12-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF085986=Sds3=FE(15.2=100),PF0056613=RabGAP-TBC=FE(12.6=100)
A:
NA
C2:
PF085986=Sds3=PD(6.3=37.5),PF0056613=RabGAP-TBC=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCAAGAGCGAAGGAGAAG
R:
TAGACTGGCCTCTCGATCAGC
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]