BtaALTA0029622-3/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000005493 | TBC1D14
Description
Bos taurus TBC1 domain family, member 14 (TBC1D14), mRNA. [Source:RefSeq mRNA;Acc:NM_001099176]
Coordinates
chr6:118286688-118287949:+
Coord C1 exon
chr6:118286688-118286768
Coord A exon
chr6:118287855-118287872
Coord C2 exon
chr6:118287873-118287949
Length
18 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GACTCCTGGTCTTTTGACAGATG
3' ss Score
7.84
Exon sequences
Seq C1 exon
AGCTCTTCGACATCTGTCTCGCCCGAGCAAAGGAGCGGTGGCGGTCCTTTAGCACGGGAGGCTCTGAAGCGGAGACCGAAG
Seq A exon
ATGCTGGTTTTTCAGCAG
Seq C2 exon
CAGACAGAGAAGCCAGTCTGGAGCTGATTAAACTGGACATCTCCAGAACATTCCCCAGTCTCTGCATTTTCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005493-25-14,25-13,25-12,25-11-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCGACATCTGTCTCGC
R:
ATCAGCTCCAGACTGGCTTCT
Band lengths:
108-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development