GgaALTA1031760-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000015546 | TBC1D14
Description
TBC1 domain family member 14 [Source:RefSeq peptide;Acc:NP_001239243]
Coordinates
chr4:79487018-79488433:+
Coord C1 exon
chr4:79487018-79487098
Coord A exon
NA
Coord C2 exon
chr4:79488339-79488433
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AGTAACTTTGGCTTTTGTAGATG
3' ss Score
6.27
Exon sequences
Seq C1 exon
AGCTATACGATATTTGTCTGGCTCGTGCCAAAGAAAAATGGCGATCACGTAGCACGGTAGGAGCTGAGGTAGAATGTGAAG
Seq A exon
NA
Seq C2 exon
ATGCTGGATTTTCTACAGCTGACAGAGAAGCAAGTTTGGAGTTAATAAAACTGGATATCTCAAGAACGTTTCCTAATCTCTGTATATTCCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015546-39-28,39-27-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATATTTGTCTGGCTCGTGC
R:
ACTTGCTTCTCTGTCAGCTGT
Band lengths:
109-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]