HsaALTA1025302-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000132405 | TBC1D14
Description
TBC1 domain family member 14 [Source:HGNC Symbol;Acc:HGNC:29246]
Coordinates
chr4:7004844-7006726:+
Coord C1 exon
chr4:7004844-7004924
Coord A exon
chr4:7006632-7006646
Coord C2 exon
chr4:7006647-7006726
Length
15 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
TTTTTGGCATCTTTTGACAGATG
3' ss Score
8.17
Exon sequences
Seq C1 exon
AGCTCTTTGACATCTGTCTTGCCCGAGCCAAGGAGAGGTGGCGGTCCCTTAGCACAGGAGGCTCTGAAGTGGAGAACGAAG
Seq A exon
ATGCTGGTTTTTCAG
Seq C2 exon
CAGCAGACAGAGAAGCCAGTCTGGAGCTTATTAAACTGGACATTTCTAGAACATTTCCTAATCTCTGCATTTTCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132405-45-35,45-34,45-33,45-32-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(11.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACATCTGTCTTGCCCGAG
R:
AAGCTCCAGACTGGCTTCTCT
Band lengths:
104-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains