DreALTA0029798-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000010779 | tlk2
Description
tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
Coordinates
chr3:19557002-19557246:+
Coord C1 exon
chr3:19557002-19557068
Coord A exon
NA
Coord C2 exon
chr3:19557152-19557246
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
TTTTGTGTGTATGAAAGGAGGAA
3' ss Score
-12.88
Exon sequences
Seq C1 exon
GTTGTCTCTAGCAGAGTACCACGAGCAAGAAGAAATTTTCAAACTGAGACTTGGCCACCTAAAGAAG
Seq A exon
NA
Seq C2 exon
GAAGCCGAGATCCAGGTGGAACTGGAGCGGTTGGAGCGTGTGCGTAATCTTCACATCCGCGAGCTCAAGAGAATCCACAATGAAGATAACTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010779-17-22,17-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGTACCACGAGCAAGA
R:
AGATTACGCACACGCTCCAAC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]