DreALTA0029798-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000010779 | tlk2
Description
tousled-like kinase 2 [Source:ZFIN;Acc:ZDB-GENE-060623-36]
Coordinates
chr3:19557002-19557246:+
Coord C1 exon
chr3:19557002-19557068
Coord A exon
chr3:19557149-19557151
Coord C2 exon
chr3:19557152-19557246
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
TGGTTTTGTGTGTATGAAAGGAG
3' ss Score
3.76
Exon sequences
Seq C1 exon
GTTGTCTCTAGCAGAGTACCACGAGCAAGAAGAAATTTTCAAACTGAGACTTGGCCACCTAAAGAAG
Seq A exon
GAG
Seq C2 exon
GAAGCCGAGATCCAGGTGGAACTGGAGCGGTTGGAGCGTGTGCGTAATCTTCACATCCGCGAGCTCAAGAGAATCCACAATGAAGATAACTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010779-17-22,17-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.152
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGAGTACCACGAGCAAGA
R:
AGATTACGCACACGCTCCAAC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]