RnoALTA0040778-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93476247-93478116:+
Coord C1 exon
chr10:93476247-93476313
Coord A exon
chr10:93478019-93478021
Coord C2 exon
chr10:93478022-93478116
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTTCTTTTTCCCTTTTCAGGAG
3' ss Score
13.49
Exon sequences
Seq C1 exon
GTTAACCTTAGCTGAATACCATGAACAAGAAGAAATCTTCAAACTTAGATTAGGTCATCTTAAGAAA
Seq A exon
GAG
Seq C2 exon
GAAGCAGAAATCCAGGCAGAACTGGAAAGGCTAGAAAGGGTTAGGAATCTACACATCAGGGAATTAAAAAGGATACATAATGAAGATAATTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285-28-28,28-27-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTAGCTGAATACCATGAACA
R:
TAGCCTTTCCAGTTCTGCCTG
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]