GgaALTA1032437-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000000410 | TLK2
Description
tousled-like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr27:2385674-2388528:+
Coord C1 exon
chr27:2385674-2385740
Coord A exon
chr27:2388431-2388434
Coord C2 exon
chr27:2388435-2388528
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTGGTTTTCTCTTGCACAGGAA
3' ss Score
9.25
Exon sequences
Seq C1 exon
GTTAACGCTAGCAGAATACCATGAACAGGAAGAAATCTTCAAACTCCGACTGGGTCATCTGAAAAAG
Seq A exon
GAAG
Seq C2 exon
AAGCAGAGATCCAGGCAGAGCTGGAACGGCTAGAGAGGGTTAGAAATCTACATATCAGGGAATTGAAAAGGATACACAATGAAGATAACTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410-23-26,23-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTAGCAGAATACCATGAACA
R:
CTCTCTAGCCGTTCCAGCTCT
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]