MmuALTA1007261-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020694 | Tlk2
Description
tousled-like kinase 2 (Arabidopsis) [Source:MGI Symbol;Acc:MGI:1346023]
Coordinates
chr11:105253291-105255063:+
Coord C1 exon
chr11:105253291-105253357
Coord A exon
chr11:105254966-105254968
Coord C2 exon
chr11:105254969-105255063
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTTCTTTTCCCCTTTTCAGGAG
3' ss Score
13
Exon sequences
Seq C1 exon
GTTAACGTTAGCCGAGTACCATGAACAAGAGGAAATCTTCAAACTTAGATTAGGTCATCTTAAGAAA
Seq A exon
GAG
Seq C2 exon
GAAGCAGAAATCCAGGCAGAGCTGGAAAGGCTGGAAAGGGTTAGGAATCTACACATCAGGGAATTAAAAAGGATACATAATGAAGACAATTCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020694-42-40,42-39-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGTACCATGAACAAGAGG
R:
CCTTTCCAGCCTTTCCAGCTC
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types