DreALTA0030296-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000020771 | tnr
Description
tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
Coordinates
chr2:35452419-35455087:+
Coord C1 exon
chr2:35452419-35452538
Coord A exon
chr2:35454944-35454949
Coord C2 exon
chr2:35454950-35455087
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTCTCTTCTCTTGCTTCCAGTTA
3' ss Score
9.88
Exon sequences
Seq C1 exon
CTATGGACATGCCAGCGGAGCTCACTGCACTGAACGTTACACCCCAAGGGGCTCTGCTGCGCTGGAACCCCCCAGCTTCCAGTGTTGATAACTACGTGCTCACTGTCACCCGGAACCAAG
Seq A exon
TTACAG
Seq C2 exon
CAGACACCTTCTTAGTGGAGGGTAACAAGCAGGAGTATCAGCTGAGTCAGCTCATCCCCAGCACCACCTACTCAGTGGCCCTTTATGCCACCAAAGGTCCTCTCACCAGCGGCACGGTCATCTCCAACTTTGTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020771-17-22,17-21-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.7=92.7)
A:
NA
C2:
PF0004116=fn3=PD(50.0=79.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTACGTGCTCACTGTCACC
R:
GAGTAGGTGGTGCTGGGGAT
Band lengths:
104-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]