GgaALTA0002293-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000004526 | TNR
Description
tenascin-R precursor [Source:RefSeq peptide;Acc:NP_990607]
Coordinates
chr8:7027836-7028372:+
Coord C1 exon
chr8:7027836-7027955
Coord A exon
chr8:7028229-7028234
Coord C2 exon
chr8:7028235-7028372
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
ACTCATCTTTCGGCTTACAGTTG
3' ss Score
7.71
Exon sequences
Seq C1 exon
CCATGGATGCCCCGCTGGGTGTCACTGCCACCAACATCACCCCCACTGAGGCACTGCTGCAGTGGAACCCCCCGCTGATGGATGTGGAGAGCTACGTCCTCGTCCTCACCCGCCACACAG
Seq A exon
TTGCAG
Seq C2 exon
GAGAAACAATTCTGGTGGATGGAATCAACCAGGAGTACCAGCTGACCAACCTTCAGCCCAGCACCACCTACACGGTCGCCATGTATGCCACCAACGGGCCCCTCACCAGCCAGACTATCAGCACCAACTTCACAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526-17-16,17-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(49.4=92.7)
A:
NA
C2:
PF0004116=fn3=PD(49.4=80.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGAGAGCTACGTCCTCG
R:
TGAAGGTTGGTCAGCTGGTAC
Band lengths:
94-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]