DreALTA0030913-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000007918 | ttc27
Description
tetratricopeptide repeat domain 27 [Source:ZFIN;Acc:ZDB-GENE-030102-1]
Coordinates
chr17:22919031-22925114:+
Coord C1 exon
chr17:22919031-22919142
Coord A exon
chr17:22925014-22925023
Coord C2 exon
chr17:22925024-22925114
Length
10 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TGTTTGTGTGCGCCCCTCAGTGT
3' ss Score
7.06
Exon sequences
Seq C1 exon
GCGCTGCAGTTTCTGAGTAAAGCTCATCGATGTGAAACGCAGGCGGCTGGATGGGAGAAAGACACAGGCAGCTTCAAATCTGTGGTGAAAGGTGCCAGAGACATGGCTAATG
Seq A exon
TGTCCATCAG
Seq C2 exon
CTGCAGCAGGTCGAAACGCAGTCCTCAAGAGGCTCTGCAGCTGCTGTCTTCAGCTCGACTCAGTCTGAAGAGTCTGACCACCAAAGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007918-23-33,23-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.088
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGGAGAAAGACACAGGC
R:
CCTCTTGAGGACTGCGTTTCG
Band lengths:
96-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]