MmuALTA0019064-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024078 | Ttc27
Description
tetratricopeptide repeat domain 27 [Source:MGI Symbol;Acc:MGI:1921446]
Coordinates
chr17:74858009-74862146:+
Coord C1 exon
chr17:74858009-74858120
Coord A exon
NA
Coord C2 exon
chr17:74862046-74862146
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTATTT
5' ss Score
3.85
3' ss Seq
TCCCTGCGTTCATCTTGCAGTGG
3' ss Score
9.99
Exon sequences
Seq C1 exon
GCATTCCAGTGTCTCTCGAAGGCGTACAAGTGTGACACACAGTCCAGTTGTTGGGAGAAAGATGCTACAGCATTTAAGGAAGTTGTTCAAAGAGCCATAGGACTCGCTCATG
Seq A exon
NA
Seq C2 exon
TGGCTATGAAATGCGCTGAGAGCAAGTCCATTCCCCAGGAAGCTGTACAAACACTTTCTTCAGTTCGACTCAATTTACGTGGCTTGTTATCCAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024078-37-40,37-39-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCTCTCGAAGGCGTACA
R:
TCTCAGCGCATTTCATAGCCA
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types