DreALTA0031012-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000037997 | tubb5
Description
tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
Coordinates
chr16:10431642-10433023:+
Coord C1 exon
chr16:10431642-10431750
Coord A exon
NA
Coord C2 exon
chr16:10432916-10433023
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
CTCTATGTCTCGTGGAGGAGGTA
3' ss Score
-11.62
Exon sequences
Seq C1 exon
TTTTGGGAGGTGATCAGCGATGAACATGGAATCGACCCAACCGGAACCTATCACGGAGACAGTGACCTCCAGCTGGACAGAATTAGTGTCTACTACAATGAGGCTACAG
Seq A exon
NA
Seq C2 exon
GTAAATATGTGCCAAGAGCCATTCTAGTGGATCTGGAGCCTGGTACCATGGACTCTGTGCGTTCAGGGCCCTTTGGACAGATCTTCAGACCTGACAACTTTGTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037997-3-2,3-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCCAGCTGGACAGAAT
R:
GTACCAGGCTCCAGATCCACT
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]