DreALTA0031012-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000037997 | tubb5
Description
tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
Coordinates
chr16:10431642-10433023:+
Coord C1 exon
chr16:10431642-10431750
Coord A exon
chr16:10432913-10432915
Coord C2 exon
chr16:10432916-10433023
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TTTCTCTATGTCTCGTGGAGGAG
3' ss Score
0.64
Exon sequences
Seq C1 exon
TTTTGGGAGGTGATCAGCGATGAACATGGAATCGACCCAACCGGAACCTATCACGGAGACAGTGACCTCCAGCTGGACAGAATTAGTGTCTACTACAATGAGGCTACAG
Seq A exon
GAG
Seq C2 exon
GTAAATATGTGCCAAGAGCCATTCTAGTGGATCTGGAGCCTGGTACCATGGACTCTGTGCGTTCAGGGCCCTTTGGACAGATCTTCAGACCTGACAACTTTGTATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037997-3-2,3-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCTCCAGCTGGACAGAAT
R:
GTACCAGGCTCCAGATCCACT
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]