BtaALTA0031741-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004093 | TUBB2B
Description
Tubulin beta-2B chain [Source:UniProtKB/Swiss-Prot;Acc:Q6B856]
Coordinates
chr23:50355742-50356231:+
Coord C1 exon
chr23:50355742-50355850
Coord A exon
NA
Coord C2 exon
chr23:50356121-50356231
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATC
5' ss Score
3.57
3' ss Seq
GTCCTGCTCTGTCCCCGCAGGTA
3' ss Score
13.72
Exon sequences
Seq C1 exon
TTTTGGGAAGTCATCAGTGATGAGCATGGCATCGACCCCACTGGCAGTTACCACGGAGACAGTGACTTGCAGCTGGAGAGAATCAATGTGTACTACAATGAGGCCACCG
Seq A exon
NA
Seq C2 exon
GTAACAAGTATGTGCCTCGGGCCATCCTGGTGGACCTGGAGCCGGGCACCATGGACTCCGTCAGGTCTGGACCCTTCGGCCAGATCTTCAGGCCTGACAACTTCGTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004093-1-2,1-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACTACAATGAGGCCACCG
R:
AAACACGAAGTTGTCAGGCCT
Band lengths:
132-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development