MmuALTA1000738-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000001525 | Tubb5
Description
tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
Coordinates
chr17:35836247-35836736:-
Coord C1 exon
chr17:35836628-35836736
Coord A exon
chr17:35836266-35836273
Coord C2 exon
chr17:35836247-35836265
Length
8 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ATTGACTTGAATTCCTGCAGGTG
3' ss Score
7.96
Exon sequences
Seq C1 exon
TTCTGGGAGGTGATAAGCGATGAACATGGCATCGACCCCACCGGTACCTACCACGGTGACAGCGACCTGCAGCTGGACCGAATCTCTGTGTACTATAATGAAGCCACAG
Seq A exon
GTGGCAAG
Seq C2 exon
TATGTCCCTCGAGCTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001525-6-10,6-9,6-8-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=FE(16.2=100)
A:
NA
C2:
PF0009120=Tubulin=FE(16.7=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types