DreALTA0032673-1/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000003899 | zdhhc23b
Description
zinc finger, DHHC-type containing 23b [Source:ZFIN;Acc:ZDB-GENE-040808-13]
Coordinates
chr24:20981768-20984634:-
Coord C1 exon
chr24:20983936-20984634
Coord A exon
NA
Coord C2 exon
chr24:20981768-20981935
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
AGCTCAGTGTCTGTTATCAGGAT
3' ss Score
5.49
Exon sequences
Seq C1 exon
CCCATCACTGTCCTGTGGTATTATTTCTTCACTCACCGAAAGAAAGGACGCACTCTATTCTTCCTCGGCCTCGCTCTCTTCTCCCTCTTCTACATGTTCTACCTGTTCCTCACGCAGGTGGTTCCTCGAGGGGAAGTCACTGAGCTTCAGCTGGCTGTGGTGACGGCTGGTGTCGCTCTCACTGTTATTTTCCTTATGCTCACCAAAAGAGGGCCAGGTTTGGTCAGACCTCGTCCATCTGAGACTCACAGTACAGTGACGTATCACAGCACTCCGCCTGATGTAGATGGGGTATATCTGAATGGAGCCCGACATCAGGTGGTCATAGGCAGTCGGGTCGCTTCATCTGAACACACTGGTGAACCCGGGACAGAAGAAGAAGAAGAAGGCGTTCAGAAGAGGAACTGGTGTGCTGTGTGTAAGGTGGTGCGTCCTCAGAGAGCCGGACACTGCAGGATCTGTGGGGTCTGTGTGCTGAGGCTGGATCATCACTGTGTCTG
Seq A exon
NA
Seq C2 exon
GATCAACAGTTGTGTTGGACTGGCCAATCACCGCACTTTCCTTCTGACGCTGCTCTTCTTCCTGCTGACGTCGATTTATGGCATCAGTCTGGTTCTGGCAAGTGTGTGTCCTGATCAGAGAGTCTTGACTGCTCTCTTCTACTGTCCCGATGTCTACAGTCAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003899-5-5,5-4,5-3-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(52.0=45.3)
A:
NA
C2:
PF0152915=zf-DHHC=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGAGGCTGGATCATCAC
R:
GACGTCAGCAGGAAGAAGAGC
Band lengths:
101-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]