RnoALTA0045451-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000060348 | Zdhhc23
Description
zinc finger, DHHC-type containing 23 [Source:RGD Symbol;Acc:1303254]
Coordinates
chr11:61667168-61670013:+
Coord C1 exon
chr11:61667168-61667878
Coord A exon
chr11:61669846-61669956
Coord C2 exon
chr11:61669957-61670013
Length
111 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CCTCCCCCTGCTGTTTTGAGGAT
3' ss Score
6.12
Exon sequences
Seq C1 exon
CTGTGGTACTACTACCTCACTCACAGAAGGAAAGAGCAGACGCTGTTTTTCTTGAGCCTCGGTCTGTTCTCCCTGGGCTACATGTACTATGTGTTCTTGCAGGAAGTGGTCCCCCAAGGGCACGTAGGGCCCGCTCAGCTGGCCCTTCTCACCTGCGGGTTATTTCTGATACTCGTAGCCTTGTACCGAGCCAAGAAGAATCCAGGCTACCTCAGCAACCCAGCATGCAATGACAAATCCCCCAGCAACAGCCAAATCGAATGCCCGATCAAAAAAGGGCAGGAGAAGACCAAAGGGTTCCCCGGCACAGATACCTCGGGGAGCCTTAACAACCGCACACTGAAGGACGATGCTAAGGGCTCCTCCAGGGTGGGGCTTGACAGCCCCGCCAAATCGAAGGAAGACTGGTGTGCCAAGTGCCAGCTAGTGCGGCCCGCCCGGGCGTGGCATTGCCGGATATGCGGTATCTGTGTGAGGAGAATGGATCACCATTGTGTCTG
Seq A exon
GATAAACAGCTGCGTCGGAGAATCAAACCATCAAGCGTTTATACTTGCTCTTTCCATCTTCTTGCTCACTTCGGTTTACGGAATATCGCTGACCTTGAACACCATCTGTAG
Seq C2 exon
GGACAGAAGCCTCTTCACAGCCCTCTTCTACTGTCCTGGAGTTTACGCTAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060348-8-10,8-9,8-8,8-7-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(52.1=46.2)
A:
NA
C2:
PF0152915=zf-DHHC=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCAGGAGAAGACCAAAGG
R:
GCTGTGAAGAGGCTTCTGTCC
Band lengths:
246-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]