RnoINT0167500 @ rn6
Intron Retention
Gene
ENSRNOG00000060348 | Zdhhc23
Description
zinc finger, DHHC-type containing 23 [Source:RGD Symbol;Acc:1303254]
Coordinates
chr11:61667168-61670013:+
Coord C1 exon
chr11:61667168-61667878
Coord A exon
chr11:61667879-61669845
Coord C2 exon
chr11:61669846-61670013
Length
1967 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CCTCCCCCTGCTGTTTTGAGGAT
3' ss Score
6.12
Exon sequences
Seq C1 exon
ATGGCTTACCTGTAAATCGCTTCGGCCGGAGACGTGTGAGAGAATCACGGATACGATTTCTGATCGCCTCCGAATTCCTTGGCTCCGAGGAGCCAAAAAAGTCAATATCAGCATCCTCCCCCCACTCGTGCTCTTGCCGGTTCTGCTCCGCGTGGCTTCCTGGCACTTCCTGCTGGGGGTGGTGGTTCTGACCTCCCTGCCCATGCTGGCACTGTGGTACTACTACCTCACTCACAGAAGGAAAGAGCAGACGCTGTTTTTCTTGAGCCTCGGTCTGTTCTCCCTGGGCTACATGTACTATGTGTTCTTGCAGGAAGTGGTCCCCCAAGGGCACGTAGGGCCCGCTCAGCTGGCCCTTCTCACCTGCGGGTTATTTCTGATACTCGTAGCCTTGTACCGAGCCAAGAAGAATCCAGGCTACCTCAGCAACCCAGCATGCAATGACAAATCCCCCAGCAACAGCCAAATCGAATGCCCGATCAAAAAAGGGCAGGAGAAGACCAAAGGGTTCCCCGGCACAGATACCTCGGGGAGCCTTAACAACCGCACACTGAAGGACGATGCTAAGGGCTCCTCCAGGGTGGGGCTTGACAGCCCCGCCAAATCGAAGGAAGACTGGTGTGCCAAGTGCCAGCTAGTGCGGCCCGCCCGGGCGTGGCATTGCCGGATATGCGGTATCTGTGTGAGGAGAATGGATCACCATTGTGTCTG
Seq A exon
GTATGTTGGAAAAGTCCGGACTCCCAGAAACCAATCCATATCCTACCCATTTTCTCCTCTCTGTGGTGTCCTAAATGTCTTCCTCCGGTTTTACACCTTGCAGATATTTGTAGGCTGTGAGGATGTTCTCGCTTAGTCATGGGGTTTTAAGTCTCACAGATTTAGTGCTTCGGTCATTTTCTGAAGGAGATTAACAGAAAAACTTTGGGAGGTTTTTTTTTTTTTCCCTTCTTCCTTTCTTTTTCTTTCCTACCTCTTTTTTCCCCTTCCAATTTCTCTTTAGTTGATGTAAAAAAAAAATGTTTTTAATCAGGAACTGTGGAGGTGGCTCAGTTGGTAAAATGCTTGCTCAAGAGCACAAGTAAGAGGACCTGCGTTCTCCTCACTACACCCCGATGCGAAGGCCATGGTCAGTGGCACACGCTTGTCATCCCAGCACTGGGAAGGCAGAGACAGGACCAGCATTGGCGCTTGCTGGCCATGGGTCTCGCTGAATTAGCAAGTTGCTGGTTCGTGAGAGACCCTGACTAAAAAACATACAGTAGAGAATGATTGAGGAAGACACCAACATCAACCTCTATTTCCACATGCAAGTGTACACACACACACACACACACACACACACCCCATCACATACACCATCACACACATACACCATCACACACATACAACATCACATATTCAATATCGGTCTTTTCTCCTGTTGCTCTTGAACAGAGAATTCTGGGAAGCAGTCCTGTCTTCAGGTGACTATAGTCTAGCTATACATCCTTAACCATTTTATGCAGCCAGGGATTTCCTCTCACCATTGTGAAGCCGAGGTCCTGAGATCCTAGATCCTATCAGATATCCCTGTATTGTTACCTGCCTGGAGAGAGGCTTTGTTTTGTACCTTCCAGCCGGCTAGCGACTGGAAGGCACGTCAGGCTCATACTATATAAAGTACAGCATCTAAAACTCCACTGAGTGACTGAGCTGAAGGGAGTGTTAGCACTCAGCCGTGGATGCTGGAGGCTGTGCTGACTACTGAACTACACTAGATCTGCAGAGAACAGGGGAGAGTAAGACTAGGAAATGCCTGGACGGTCTTGAAATGGCCCTCACGGGCATGGCCCTAAGACAGGGGCAGCAGTTTCTGGGACTTGTCTTTCCCTGTAAAGGGGTGTTTAGTTTTAGATGTGCATGTTTTTGCCTTTGTCATTTACCACTATTCTATGCATGTGCGCGTGAGTATGTTGGCCCCTTTCCAAATGCTTGCTTTTGGAGTCAGACAGCGAGTCCCTCGGGAAACCTCTGGCCACTGAGCATTCTGAGTTGCATGTGCAGAAGCCATGGCCTGCGCACCCTCCCCTCACAGAGGCCACGACACAGGACCATTTCTTACCTGACCTGCTTCCTAATACCTTGTTTGCCATGCCGAACCATAGCTTTAACTGCTTCAGATCCTTTTGTTGCTCTCGTACATACTAAACATGTCTTCCTATTGTGTGCGGGTATTTCTGACTGGACTTTTCAAGTCTTCATAACTGCTAAACAAGCTTTCCTCATGGCTGGATAACAGACCTCACTTAGCAGATTTAGGGACAGGGGCTGGGGTGTAGTTTGCCTAACATGCAGGAGGATCCGGGCTCAATCCTTAGCACTACATAAAATCCCCACGTGTACGTATACATTGTTTACGTTCATACGTGTACGAGCTCTACATCTATATGTTGCTAGCTGTCTTCTGCTCTGTTATTAGTCCTGGCTTTCAGCTAAGTGACAGTGGTTCTGTCCTTCCATAGAGAATGTGACACTGTCGCACAGTAGGCAGGTTTTGCCTCCCTAAAACTAAGATGAAAACAGTTCACTGTCTCAGCACTGAAGTTCTCACTGTCCGTATTTTAAAGGCTTGCTTGTGTATCGTGTGAGCTACAGGAGACATTCTCAAACAAATGTATTTGTCCCCCTCCCCCTGCTGTTTTGAG
Seq C2 exon
GATAAACAGCTGCGTCGGAGAATCAAACCATCAAGCGTTTATACTTGCTCTTTCCATCTTCTTGCTCACTTCGGTTTACGGAATATCGCTGACCTTGAACACCATCTGTAGGGACAGAAGCCTCTTCACAGCCCTCTTCTACTGTCCTGGAGTTTACGCTAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060348:ENSRNOT00000079423:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(52.1=46.2)
A:
NA
C2:
PF0152915=zf-DHHC=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCTTGTACCGAGCCAAGA
R:
TGGTTTGATTCTCCGACGCAG
Band lengths:
355-2322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]