MmuINT0178298 @ mm9
Intron Retention
Gene
ENSMUSG00000036304 | Zdhhc23
Description
zinc finger, DHHC domain containing 23 [Source:MGI Symbol;Acc:MGI:2685625]
Coordinates
chr16:43971512-43974279:-
Coord C1 exon
chr16:43973581-43974279
Coord A exon
chr16:43971680-43973580
Coord C2 exon
chr16:43971512-43971679
Length
1901 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CCCCCCCCTGCTGTTTTGAGGAT
3' ss Score
6.16
Exon sequences
Seq C1 exon
ATGGCTTACCTGTCAATCACTTCGGCCGGAGACTTGCGAAAGAATCACGGATACAATTTCTGACCGCCTCCGAATTCCTTGGCTCAGAGGAGCCAAAAAGGTTAATATTAGCATCGTCCCTCCACTTGTGCTTTTGCCGGTTTTCCTTCACGTGGCTTCCTGGCACTTCCTGCTGGGGGTGGTGGTTCTGACCTCCCTTCCCATGCTGGCACTCTGGTATTACTACCTCACTCACAGAAGGAAAGAACAGACGCTGTTTTTCCTGAGCCTCGGGCTGTTCTCACTGGGCTACATGTACTATGTGTTCCTGCGGGAAGTGGTCCCCCAAGGGCGCGTGGGGCCCACTCAGCTGGCCCTCCTAACCTGCGGGTTACTTCTGATACTCTTAGCCTTGTACCGAGCCAAGAAGAATCCAGGCTACCTCAGCAATGACAAATCCCCAAGCAACAGCCAAATTGAATGCCCGGTCAAAAAAGGGCAGGAGAAGACCAAAGGGTTCCCCGGCACAGACGCCTCGGGGAGCCTCAACAACCGCACACTGAAGGACGATGTTAGGGGTTCCTCCAGGGTGGGGCTTGACAGCCCTGCCAAAGTGAAGGAAGACTGGTGTGCCAAGTGCCAGCTAGTACGACCCGCCCGGGCATGGCATTGCCGGATATGCGGTATCTGTGTACGGAGAATGGACCATCATTGTGTCTG
Seq A exon
GTATGTTGGAAAAATCTGGATTCCCAGAAACTAACTAAATCCACATCCTAGCCATTTCGATCTTCTTTTATGGTGTCCTAAAATGTCTCTTCCCCAGTTTTACACCTTGTAGATATTTGTAGGCTGTGAGGACGTTCCCGCTTAGTCATCGGGTTTGTGAGTCTCTCAGATTTAGTGCCTTCAGTCATTTCCTGAAGATTAGTAGAAAAACTTCGGGAGGGTTTTTTTTTTTTTTCCTTCCTTTCTTTTTCTTTTTCCCTTCCAATTTCCCTTTAATTGGTTTTAAAAAATGTATTTAGTCAGGAACTGTAGAGATGGCTCTGTTGGTAAAATGCTTGCTCTGCAAGCAAGAGGTCCTGAGTTCTCTCCTCTACACCCTCACAGGAAGGCCATGCTCAGTGGCACGTGCTTGTTATCCCAGCACTGTGAAGGCAGAGACAGGAGCTTGCTGGCCATTGCATCTAACTGAATTAGCAAGTTGGCAAGTTCAGTAAGAGACCCTGACTAATAAAACATACTGTAGAAAATGATTAAGATACCAGCATCAAACTCTGTTTCCACACGCAAGTGTACACACACACACACACACACACACACACAACACTATAGCATAATTGGTATAGGTCTTTTCCTCTGTTTCTCTTGAACAGAGAATTCTGGGAGGCGGTCCCTGTCTTCAGGTGACTGTTCGCTGGCTGTATATCCTTCATCATTTTATGCAAGCAGGGATTCCACTCACCCTTGTGCAGTTGTGGTCCTATCAGCTATCTCTGTATTGTTACCTGCCAGGAGATAGGCTTTGTTTTGTACCTTCCAGCTGGCCTGTGACAAGGAAGGCACATCAGGCCCATACCATATAAGGTGCAGCTCTAAAACTCAGTGAGTGACTGAGTGAAGGGAGTCTTAGCACTCAGCTGAGAAGGCTGGGAATGGCAAGGCTGCAGTTGCCTTGCTCTCTGGGCAGTGCGGGCTACTGAACTACATTAGGCCTGAAGAGAACAGGAGGGAGGGAGACTGTAGGAGGTGCTGGAGGTCTTGAAGTGGCCCTGACAGGAGCAGCCTTTTCTGGGACTTGTCTTTCCCTGTAAAGGGTGTTTTCATTTTTTAGATGGGCACTTTTTTGCCTTTATCATTTACTCCTATTATGTACGTACAGACGTGAATGTGGTGGCCCATTTCCAAATGCTTACTTGCAGAGTCCGACAGCCTGTCCCATGGGAAACCTCTGGCCATTGAGCATTCTGTGATGCTTGGCCGGCCTGCGCACCCTTCCCTCACAGAGGCCCTGACACAGGACCATCTTTTACCTGACCTGCTTCCTAATACCTTGTTTGCCACGCTGAGCCATAGCTGTAACTGCTTCCGAGCCTTCTGTTGCTCTTATATGTACTAAGCATAGTTTGCTATTTTGTGCGGGTATTTCTGACTGGACTTTTCAAGTTTTCATAACTGCTAAGTAAACTTTCCTCACGGCTAGGTAATAGACCTCACTAAGATATAGGGACGGGCTGGGGGTGTAGCCCAACGATAGTGTTTGTCAAACGATAAGCCGGGCTCCGTCACTAAGCACTCCATAAAACCCCCACATAGATGTATACACTGCATGTGTGCAAGCTCTGTATCTATATGGATAGATTTGCTAGCTGGGTCTGCTGTGTTATTAGTTTCAGCTTTAAACTAAGTGGTAATGGTTCTATCTTTCCATAGAGAATGTGAGATTTTGTCACGCAGTAGACAGGTTGTTTTTTTTTTTCCCCCTTAAGACGGAAACGATAATGATTTGCTGTTTTATAACTGCAGTTCTTACTGTCGGTATTTCAAGGCTTTCTTGTATATCACGTGAGTTACAGGAGACATTCTCAAACAAATGTATTTGTGTCCCCCCCCCCTGCTGTTTTGAG
Seq C2 exon
GATAAATAGCTGCGTCGGAGAATCAAACCATCAAGCATTTATACTTGCCCTTTCCATCTTCTTGCTCACTTCGGTTTACGGAATATCGCTGACCTTGAACACCATTTGTAGGGATAGAAGCCTCTTCACAGCCCTCTTCTACTGTCCTGGAGTTTACGCTAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036304-Zdhhc23:NM_001007460:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(52.0=45.3)
A:
NA
C2:
PF0152915=zf-DHHC=FE(26.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCTTGTACCGAGCCAAGA
R:
TGGTTTGATTCTCCGACGCAG
Band lengths:
343-2244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: