GgaINT0112103 @ galGal3
Intron Retention
Gene
ENSGALG00000015123 | ZDHHC23
Description
NA
Coordinates
chr1:86363318-86364628:-
Coord C1 exon
chr1:86363934-86364628
Coord A exon
chr1:86363486-86363933
Coord C2 exon
chr1:86363318-86363485
Length
448 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TTTTTCTTTCCTTTTTGAAGGAT
3' ss Score
10.4
Exon sequences
Seq C1 exon
AACAGGTGGCTGACCTGCAGATCCCTGCCCCCAGGAGCGCTGGAGAGAATCGCCGACACCGTTGCGGACCGGTGCCGTGTCCCTTGGTTTGCCGGGGCCGTGAAGATTAACGTCAGCCTCGTGCCGCCGATGGTCCTGCTCCCCGTCTTCCTGCATATCGCAGCTCTGCACTTCCTGCTGGGGCTGGTGGTGCTGACATCGCTTCCCGCCGTGGTGCTGTGGTATTACTACCTCACCCACAGGAGGAAGGAGCGGACTCTTTTCTTCCTGAGCCTGGGACTGTTCTCCCTGGGCTACATGTACTATGTTTTCCTGCAGGAGGTGGTTCCTCGAGGCCACGTGGGGTATTCCCAAGTGGCACTTCTTACCTGTGGGCTAATTCTTATGCTTGTGGCTTTGTCGCGAGCCAAGAAAGACCCTGGCTACCTTCCCATCTCAACAAGTGTTGACAAGCCATCGCAGCAGGCTTTTCCCAGCAAGAGTGTTCGAGGGAGCTCCAATGGGCTCCATGGAGCTGCTGCCGGTGGCCATTCTGTGAATGGGGAGACCAAAGGCTACTCCAGAGTGCTGGCTGAGGAGCGAGAAGGTGTGAAAATGGACTGGTGTGTCAAGTGCCAGCTGGTCAGGCCGGCCCGGGCAGGGCACTGCCGGCTGTGTGGCAGGTGTGTGAGGAGACTGGATCATCACTGTGTCTG
Seq A exon
GTATGTTTGGCTTTGCTAAAGATGTGTGTTTTCTGTTTCTTTTCTTTCTTTTAAGTTAGCTTTTTTTTCTTTTTTTCTTTTCTTTCTTTCTTTTTTTTTTTTTTTCCCCAGACCCTATGAAATGGGCTTGCTTTTCATGTGTGGAGGGAACCTAAAGCTGTCATCGCTACAGTATTGTAACCAAGGAGCAGCGGGGTATGAGTGTTTTAGCTATGGATGCCTGAAAGTTCCTGGGGTACACAGTTCACCACTCCTACCTTACTGGTCTATTGACTTGTGCCTATGAGCTTTCTATAAAAAGCTATAAAGCTGCTTTGAAGCTGCCTGTGTTGCAGTGAGACCTCAGAAATCAGGTTCTCTGATGGTTGGGGGAGGGAGAAGGAAAGAGAAGCCAGCTTTTTTTTTTTCCCCTTAAAGTAATCTTTTTTTTTTTCTTTCCTTTTTGAAG
Seq C2 exon
GATTAACAGCTGTGTAGGGGAGCAGAACCACCAAGCATTCATCCTTGCACTGTTCTTCTTCATGCTCACCTCTCTGTATGGAATTATGCTGACTCTAGACACCATCTGTAGGGGACGAACCCCATTCACAGCATTGTTCTACTGCCCTGGGGCCTATTCTGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015123:ENSGALT00000024406:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0109814=FTSW_RODA_SPOVE=WD(100=40.5),PF0152915=zf-DHHC=WD(100=44.4)
A:
NA
C2:
PF0152915=zf-DHHC=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCGAGGGAGCTCCAATG
R:
ATGCTGTGAATGGGGTTCGTC
Band lengths:
348-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]