BtaINT0164168 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004974 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:HGNC:28654]
Coordinates
chr1:59069613-59072054:+
Coord C1 exon
chr1:59069613-59070323
Coord A exon
chr1:59070324-59071886
Coord C2 exon
chr1:59071887-59072054
Length
1563 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CCCCCTTGTGCTGTTTTGAGGAT
3' ss Score
6.28
Exon sequences
Seq C1 exon
ATGGATCACGTGTAAGTCCGTGCAGCCTGAGACCTGTGAAAAGATCATGGACACGATCTCAGACCGCCTCCGGATTCCTTGGCTTAGGGGAGCCAAGAAAGTTAACATTAGCATCCTTCCCCCACTGTTCCTGCTGCCTGTCTTCCTCCGAGTGGCTTCCTGGCATTTTCTCCTTGGGGTGGTGGTTTTGACCTCCCTCCCCGTGCTGGCTCTGTGGTACTACTACCTCACTCACAGAAGGAAAGAACAGACTCTGTTTTTCCTGAGCCTCGGACTGTTCTCTCTGGGCTACATGTACTATGTGTTCCTGCAGGAAGTGGTCCCCAAGGGGCGTGTGGGGCCCACTCGGCTGGCTCTTCTTACCTGCGGGTTATTGCTCATCCTCTTCGCCTTGTACAGAGCCAAGAAGAATCCAGGCTACCTCAGAAACCCAGCACACAATGACAGGGCTCTAAGTGGCAGCCAGGTCGAATGCCTGAACAGAAAAGGGCCTGAGAAGCCCAAGGGGTTCCCCAGCGCAGATCTGTCTGGCGGTCTCAACAACCGCGCACCCAAGGATGAGACTAAGGACTCCCCGAGGACGTCGGCCGGAAGCCCGGCCAAAGGGAAGGATGACTGGTGCGCCAAGTGCCAGCTGGTGCGGCCAGCCCGGGCGTGGCACTGCCGGATCTGCGGCATCTGTGTGAGGAGGATGGATCACCACTGTGTCTG
Seq A exon
GTATGTTGGAAAGATCTGGAGGCTTGCGGAGCCTACAGAAGCCCTCCTGAGACTCGCGGGGCGTGCTTTCCCTTTGTTTCCATCCTCGTCTCTCCCGCTCCCAGCTTTACACCTTGTAGATATTTGTGGGCTGTATATGGTGTTGCCACTTAGTCATCAGTTTTTCGAGCTTCACAAATTTAGTTCTTTTCAGTCATTTCCTGAAGGTGTTTTTTTTTTTTTTTGGGCTTTCTCTTCTTAGCTGCCCCTCATTTTCTCCTTACTAAGAGAGAGGTATCTACAGTTGAATGACATTTAAAAAAAGAATGTATTAGAAGTAATACAGGTGCGTCTCCCTCACAGAGCTTAGGAACATGTTCCTGTACCTCTAGGTGACTCTTATCCTCTGACTGTGTATTCTTCCATCATTTAGATGTACCAGTGATTTCTAGTCTACATTCTTAAGGCTCTTCCAGATAATTCCCTATTTGGTTATCTGTGCAGAAGTGGGCTTTTTTGGGGCACTTCTCTGCTGCCCAGTGACAAATGAGGACACCTGAGGCCTGTAAGATGTGAAATGTGACTTTTAAAGAAAATGTTGCAGCTTCACTGACTAAATCTTAAAAGGGGTGTGATTCACTCAGATATGAATGTTCTCAGTAGCTTGTTCACAACTTTCTCACTCTTGAGGCAGTCACAGTCAGTGAATTACTCTTTTTACGCCTAGCATTCTGATCATGTTCCACTCTCCCTCTTAGAAGGGGATGTGGAAAAGGGTGCTGACCGCCCGGACGGCACAGAAGCGGACCTTAAGTTCAAGGCTTGTGAACAGGGACAGCTGTTTTTCTGGGGCTTTGGGCTTTAGGAGTAAACAGGTATTTTCATTTTTAGGTTTTCTTCTTCTCTGTCTTCATCATTTATTCTCATGCATGCCTGTGTATGTGCGTGTGGGGTGGTGGTGGTCCATTTGCAAGCGCTGGTTTGCAGAGGGCCTGACAGCCTCGCTTATGAGATCTCTGCCCATGGATTATCCTGATGTGCCCGTCCACGTGCCCTGCAAATGGCCATGACATGGAACTCTGTACGTGACAAGTAGTCTGCATACTATCGAGCTGTTCTCCAGCCCCACACTGTATTTCTAACCTCCTGGGATCTTTTATTAATATATGTATTTAATAGGGTTTTTTTTTTCCCACACTGTGTAATACTTCTGATTTAGCATTTTTAAGTTTTTATAACTCTGATACCATCTTATCCTTATGGCAGTGATGACAGTGTTAACTCTTAACACTGGGTGACAGACCTCACTAATATCTAGAAAGATTTCTTAGCTGTGTTTTACTTTTCATGTACTCTTGTCCTTAAACTAATGAGATGATTTCTCTTTGCAAAGATTAGAGAATGTAAGAGTACATCTCTCAGCAGACGAAATTTTAATTCCCTAAAAGTGGAAAACAAGAGAACATATTTTTTTTAATAACTGAAATGCATACTATCCCTGTATTAAATGCTTTCTTGTTTATTGAGTTACATAGAGAACTTTTAAAGACATGTTTGCTTTCTTCCCCCTTGTGCTGTTTTGAG
Seq C2 exon
GATAAATAGCTGTGTCGGAGAATCAAACCATCAAGCATTTATACTTGCCCTTTTGGTCTTCCTGCTCACCTCGGTGTATGGGATAACGCTGACCTTGGACACCATCTGTACAGACAGAAGTGTCTTCACAGCTCTCTTCTATTGCCCTGGAGTTTATGCAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004974:ENSBTAT00000006547:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(52.1=46.2)
A:
NA
C2:
PF0152915=zf-DHHC=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCTGAACAGAAAAGGGCC
R:
CAGATGGTGTCCAAGGTCAGC
Band lengths:
348-1911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development