HsaINT0185240 @ hg19
Intron Retention
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:28654]
Coordinates
chr3:113672547-113675353:+
Coord C1 exon
chr3:113672547-113673257
Coord A exon
chr3:113673258-113675185
Coord C2 exon
chr3:113675186-113675353
Length
1928 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TTTCTCTATGCTGTTTTGAGGAT
3' ss Score
4.98
Exon sequences
Seq C1 exon
ATGGATTACATGTAAATCTTTACAGCCAGAGACTTGTGAAAGAATCATGGATACAATTTCTGATCGCCTCCGAATTCCTTGGCTTAGGGGAGCCAAAAAAGTGAACATCAGCATCATCCCTCCGCTTGTCCTGCTGCCTGTCTTCCTTCATGTGGCTTCCTGGCATTTCCTCCTGGGGGTGGTGGTTTTGACCTCCCTTCCTGTGCTGGCACTGTGGTACTACTACCTCACTCACAGAAGGAAAGAACAGACCCTGTTTTTCCTGAGCCTTGGACTGTTCTCTCTGGGCTACATGTACTATGTGTTCCTGCAGGAAGTGGTCCCCAAAGGGCGTGTGGGTCCCGTTCAGCTGGCGGTTCTTACCTGCGGGTTATTTCTGATACTCTTAGCCTTGCACAGAGCCAAGAAGAATCCAGGCTACCTCAGCAATCCAGCAAGCGGTGACAGATCTCTAAGCAGCAGCCAGCTGGAGTGCCTGAGCAGAAAAGGGCAGGAGAAGACCAAAGGGTTCCCTGGGGCAGACATGTCGGGCAGTCTCAACAATCGCACAACAAAGGATGACCCCAAGGGCTCTTCCAAGATGCCAGCTGGAAGCCCCACCAAAGCGAAGGAGGACTGGTGTGCCAAGTGCCAGCTGGTGCGACCAGCCCGGGCATGGCACTGCCGGATATGTGGCATCTGTGTGAGGAGAATGGATCATCATTGTGTCTG
Seq A exon
GTATGTTGGAAACATTTGGAGACTTGGAAAGTGTAAATTCATGTAAAACTCTAGTTACATTTTATCTTCCCTTGTGCTATCCCAAAATTTCTCTCCTTCCCAGCTTTACACCTTGTAGATATTTGTGGGTTGTTGTGATGTTCCCACTTAGTCATCAGTTTTTCGAGTTTCACAAATTTAGTTCCTTCAGTCATTTCCTGAAGGAGAATAACAGAAAACTTGTGGGGTTTTTTTTTTCTCAATTTTCTTTTGAATGACTCCTCATTTATCTTTTCCTTTCTAATAGAGAAATATCTACAGTTGAATGATTTTTTAAAAAAAGAATTGATCAGAAACAGTATAAGCATATTTCCCTGTGCTATTCCTTTTTAAACATAAAGCTCAAGAAAGTGTACCCCTATTTTTAGGTGACTCTTTTGTCCCCTTGCCATACATACTTAATCGTTTTTGATGCTACCGATGATTTCCACTTAACATTATTGAATCGAGGTCCCACCAGATAAACTCTCTATTTGATTATTTGCAGAGAAATGGGCTTTTGTACCTGCCAGTTGGCCAGTAACAAACGAAGGTACATAAGGCTCCGTAAAATATGAAGTGCAATGTTTAAAGATAATGTTGCAGCTTCACTAAATACATCTAAACTAAAGGGACTATAATTAATTCAGATATGAATGCTGTAAGTAGCATGTTTGCAGTTTATTGCTCTTCAGGCAGTCGTGATCAATGAATTAATGCTTTTCGTGTCTAGGATTCTGGTCCTGTAGCGTACCTCCTCCTCAGAAGGGGATGCAGGAGAGGGTGAGGGTGCAGAAAAGGCTGAGAGGCATTGGCGTGGGCCTCAAGTGCATGGCTCAAGTGCAGGGCAGCTCTTTTCTGGGTCCTTGTCTTTAGAAGTAAACAGGTGTTTTCATTTTTAGATGTTCTACTTCTGTGTCTTCACTTATTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTTCCATTTACAAATGCTGGTTTGCAGAAGGCTCACCTAACAGCAGATATGTGCCCACTGGAGCATCCTGGCATGCAGTGGGTAGAAGGCACTCCCTCTACATTCTGCCCCACAAATGGCCATGACACAGAACTGTTTTTACCTGCCAAAGAGCCTGCATGTTATCAAGTTGTTCTTCCCCCTACGCTATGTTTCTAACCTCTTTGGATCTTTATATTACTCTTCATATATTTAACATGAATTTTCCCATACTATGTAATACTTCTGATTTAGCATTTTTAAGTTTTCATAATTCTATTTATCTCCCTTTCCTTAACATGGTGAGGACAATGTTAGATCTCCATAGCTGGGTAATATTGATATTTAGGAAGATTTGTTAGCCAGGTTCTGCTTTTTATACTTAGTCTTGTCCTTAAACTGACGATATGATTCCACTTTGCGAAGAGTAGAGAATATAAGACTGCATTCCTCAGGGTGCAAGTTTTTAATTCCCTAAAATTGAAAAATAAGAGAACTTCTTAATAACTGGAATTTACATTTTCCCTATTTAAAACCTTGTCTTGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCTGAGGTGGGTGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTCAAAATACACAAATTAGCTGGGCATGGTGGCATGTGCCTGTAATCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATTGCTTAACCGGGACCCGGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCGCCATTGCACTTTAGCCTGAACTACAGAGCAAGACTCCGTCTCAAAAAAAATAAAGCTTTCATGTTTATTATGTAAGTTATATCAAGAACTCTTAAAAATGTGTTTGCTTTTTTATTTCTCTATGCTGTTTTGAG
Seq C2 exon
GATAAATAGCTGCGTTGGAGAATCAAATCATCAAGCATTTATACTTGCCCTTTTGATCTTCTTGCTCACCTCGGTGTATGGGATCACACTGACCTTGGACACCATTTGTAGAGACAGAAGTGTCTTCACAGCTCTTTTCTATTGTCCTGGAGTTTATGCAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307-ZDHHC23:NM_173570:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0152915=zf-DHHC=PU(52.1=46.2)
A:
NA
C2:
PF0152915=zf-DHHC=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTCTAAGCAGCAGCCAGC
R:
TGTGATCCCATACACCGAGGT
Band lengths:
353-2281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)