MmuEX0052928 @ mm9
Exon Skipping
Gene
ENSMUSG00000036304 | Zdhhc23
Description
zinc finger, DHHC domain containing 23 [Source:MGI Symbol;Acc:MGI:2685625]
Coordinates
chr16:43971512-43979206:-
Coord C1 exon
chr16:43979021-43979206
Coord A exon
chr16:43973581-43974279
Coord C2 exon
chr16:43971512-43971679
Length
699 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTTCTCTCTGAATAGATG
3' ss Score
9.79
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
TGCCTCATGGTGACAGGTACAAATCCGTACACTAAAGGGCAATATGAAGCCAGTCAAAAAAAAGAAAACCGAAGAACCTGAATTGGAGCCCCTGTGCTGTTGCGAATACATAGATCGAAATGGGGAAAAGAACCACGTGGCTGCCTGTTTGTGTGATTGTCAAGACCTCGATGAAGGCTGTGACAG
Seq A exon
ATGGCTTACCTGTCAATCACTTCGGCCGGAGACTTGCGAAAGAATCACGGATACAATTTCTGACCGCCTCCGAATTCCTTGGCTCAGAGGAGCCAAAAAGGTTAATATTAGCATCGTCCCTCCACTTGTGCTTTTGCCGGTTTTCCTTCACGTGGCTTCCTGGCACTTCCTGCTGGGGGTGGTGGTTCTGACCTCCCTTCCCATGCTGGCACTCTGGTATTACTACCTCACTCACAGAAGGAAAGAACAGACGCTGTTTTTCCTGAGCCTCGGGCTGTTCTCACTGGGCTACATGTACTATGTGTTCCTGCGGGAAGTGGTCCCCCAAGGGCGCGTGGGGCCCACTCAGCTGGCCCTCCTAACCTGCGGGTTACTTCTGATACTCTTAGCCTTGTACCGAGCCAAGAAGAATCCAGGCTACCTCAGCAATGACAAATCCCCAAGCAACAGCCAAATTGAATGCCCGGTCAAAAAAGGGCAGGAGAAGACCAAAGGGTTCCCCGGCACAGACGCCTCGGGGAGCCTCAACAACCGCACACTGAAGGACGATGTTAGGGGTTCCTCCAGGGTGGGGCTTGACAGCCCTGCCAAAGTGAAGGAAGACTGGTGTGCCAAGTGCCAGCTAGTACGACCCGCCCGGGCATGGCATTGCCGGATATGCGGTATCTGTGTACGGAGAATGGACCATCATTGTGTCTG
Seq C2 exon
GATAAATAGCTGCGTCGGAGAATCAAACCATCAAGCATTTATACTTGCCCTTTCCATCTTCTTGCTCACTTCGGTTTACGGAATATCGCTGACCTTGAACACCATTTGTAGGGATAGAAGCCTCTTCACAGCCCTCTTCTACTGTCCTGGAGTTTACGCTAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036304-'2-3,'2-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.146 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(52.0=45.3)
C2:
PF0152915=zf-DHHC=FE(26.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACAGGTACAAATCCGT
R:
ATTAGCGTAAACTCCAGGACAGT
Band lengths:
342-1041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types