DreEX6094810 @ danRer10
Exon Skipping
Gene
ENSDARG00000003899 | zdhhc23b
Description
zinc finger, DHHC-type containing 23b [Source:ZFIN;Acc:ZDB-GENE-040808-13]
Coordinates
chr24:20981768-20986260:-
Coord C1 exon
chr24:20986087-20986260
Coord A exon
chr24:20983936-20984634
Coord C2 exon
chr24:20981768-20981935
Length
699 bp
Sequences
Splice sites
3' ss Seq
AAACATATTTTCTTTTCTAGATG
3' ss Score
9.58
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
GAATGCGGTCTCTTTGTTTTATGAGTTGATGTCCATCATGAAGAAGAGATCTAGTCGAGCAGCAGATCCGGATGAACTTCTGTGCTGTTGTGAGTACATTGACCGTCATGGCAGTCGCAGTCACATGGTGGCATGTTGCTGTGACTGTGAGGATTTGGATGAGGCTTGTGACAG
Seq A exon
ATGGATGAACAAGGAGCCTCAAAACCCAGACTCTGTGTCTCGGGCACTGGCCACCATCAATGACCGTCTGCGGGTGCCTTGGATATCCGGTGCCCGACAAATAGACGTATCACTCATCCCTCCTCTCATTCTACTGCCTGTTTTTTTGCACATTGCAGCTTTGCACTACCTGCTGGGAATTATAATGCTGACAGCCATGCCCATCACTGTCCTGTGGTATTATTTCTTCACTCACCGAAAGAAAGGACGCACTCTATTCTTCCTCGGCCTCGCTCTCTTCTCCCTCTTCTACATGTTCTACCTGTTCCTCACGCAGGTGGTTCCTCGAGGGGAAGTCACTGAGCTTCAGCTGGCTGTGGTGACGGCTGGTGTCGCTCTCACTGTTATTTTCCTTATGCTCACCAAAAGAGGGCCAGGTTTGGTCAGACCTCGTCCATCTGAGACTCACAGTACAGTGACGTATCACAGCACTCCGCCTGATGTAGATGGGGTATATCTGAATGGAGCCCGACATCAGGTGGTCATAGGCAGTCGGGTCGCTTCATCTGAACACACTGGTGAACCCGGGACAGAAGAAGAAGAAGAAGGCGTTCAGAAGAGGAACTGGTGTGCTGTGTGTAAGGTGGTGCGTCCTCAGAGAGCCGGACACTGCAGGATCTGTGGGGTCTGTGTGCTGAGGCTGGATCATCACTGTGTCTG
Seq C2 exon
GATCAACAGTTGTGTTGGACTGGCCAATCACCGCACTTTCCTTCTGACGCTGCTCTTCTTCCTGCTGACGTCGATTTATGGCATCAGTCTGGTTCTGGCAAGTGTGTGTCCTGATCAGAGAGTCTTGACTGCTCTCTTCTACTGTCCCGATGTCTACAGTCAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000003899-'4-5,'4-1,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(52.0=45.3)
C2:
PF0152915=zf-DHHC=FE(27.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGCGGTCTCTTTGTTTTATGAGT
R:
CTGTATTGACTGTAGACATCGGGAC
Band lengths:
342-1041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]