RnoEX0100875 @ rn6
Exon Skipping
Gene
ENSRNOG00000060348 | Zdhhc23
Description
zinc finger, DHHC-type containing 23 [Source:RGD Symbol;Acc:1303254]
Coordinates
chr11:61662256-61670013:+
Coord C1 exon
chr11:61662256-61662527
Coord A exon
chr11:61667168-61667878
Coord C2 exon
chr11:61669846-61670013
Length
711 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTTCTCTCTGAATAGATG
3' ss Score
10.05
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCGTTGGCGTTAATGAGAAGTGAAGATGTGTTTACAGGATGTGAGTTGAGTTCTCTCCACCTTTACCTTCCGAGAGCTGCTTCTTATGCCTCATGGTGACAGGTACAAATCTTTACGCTAAAAGGCAATATGAAGCCAGTAAAAAAAAAGAAAACCGAAGAGCCTGAATTGGAGCCCCTGTGTTGCTGTGAGTACATAGATCGAAATGGGGAAAAGAACCACGTGGCTGCCTGTTTGTGTGATTGTCAGGACCTCGATGAAGGCTGTGACAG
Seq A exon
ATGGCTTACCTGTAAATCGCTTCGGCCGGAGACGTGTGAGAGAATCACGGATACGATTTCTGATCGCCTCCGAATTCCTTGGCTCCGAGGAGCCAAAAAAGTCAATATCAGCATCCTCCCCCCACTCGTGCTCTTGCCGGTTCTGCTCCGCGTGGCTTCCTGGCACTTCCTGCTGGGGGTGGTGGTTCTGACCTCCCTGCCCATGCTGGCACTGTGGTACTACTACCTCACTCACAGAAGGAAAGAGCAGACGCTGTTTTTCTTGAGCCTCGGTCTGTTCTCCCTGGGCTACATGTACTATGTGTTCTTGCAGGAAGTGGTCCCCCAAGGGCACGTAGGGCCCGCTCAGCTGGCCCTTCTCACCTGCGGGTTATTTCTGATACTCGTAGCCTTGTACCGAGCCAAGAAGAATCCAGGCTACCTCAGCAACCCAGCATGCAATGACAAATCCCCCAGCAACAGCCAAATCGAATGCCCGATCAAAAAAGGGCAGGAGAAGACCAAAGGGTTCCCCGGCACAGATACCTCGGGGAGCCTTAACAACCGCACACTGAAGGACGATGCTAAGGGCTCCTCCAGGGTGGGGCTTGACAGCCCCGCCAAATCGAAGGAAGACTGGTGTGCCAAGTGCCAGCTAGTGCGGCCCGCCCGGGCGTGGCATTGCCGGATATGCGGTATCTGTGTGAGGAGAATGGATCACCATTGTGTCTG
Seq C2 exon
GATAAACAGCTGCGTCGGAGAATCAAACCATCAAGCGTTTATACTTGCTCTTTCCATCTTCTTGCTCACTTCGGTTTACGGAATATCGCTGACCTTGAACACCATCTGTAGGGACAGAAGCCTCTTCACAGCCCTCTTCTACTGTCCTGGAGTTTACGCTAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060348-'7-8,'7-5,8-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(52.1=46.2)
C2:
PF0152915=zf-DHHC=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTACCTTCCGAGAGCTGC
R:
GCTGTGAAGAGGCTTCTGTCC
Band lengths:
345-1056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]