HsaEX6057773 @ hg19
Exon Skipping
Gene
ENSG00000184307 | ZDHHC23
Description
zinc finger, DHHC-type containing 23 [Source:HGNC Symbol;Acc:28654]
Coordinates
chr3:113667641-113675353:+
Coord C1 exon
chr3:113667641-113667810
Coord A exon
chr3:113672547-113673257
Coord C2 exon
chr3:113675186-113675353
Length
711 bp
Sequences
Splice sites
3' ss Seq
TTTGTGCTTTTTCTGAATAGATG
3' ss Score
8.65
5' ss Seq
CTGGTATGT
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTGCAAATCATGACACAGAAGGGCAGTATGAAGCCTGTGAAGAAAAAGAAAACCGAAGAACCTGAATTGGAGCCCCTGTGCTGCTGCGAGTACATAGATCGGAATGGGGAAAAGAACCACGTGGCTACTTGTTTGTGTGATTGTCAAGATCTGGATGAAGGGTGTGATCG
Seq A exon
ATGGATTACATGTAAATCTTTACAGCCAGAGACTTGTGAAAGAATCATGGATACAATTTCTGATCGCCTCCGAATTCCTTGGCTTAGGGGAGCCAAAAAAGTGAACATCAGCATCATCCCTCCGCTTGTCCTGCTGCCTGTCTTCCTTCATGTGGCTTCCTGGCATTTCCTCCTGGGGGTGGTGGTTTTGACCTCCCTTCCTGTGCTGGCACTGTGGTACTACTACCTCACTCACAGAAGGAAAGAACAGACCCTGTTTTTCCTGAGCCTTGGACTGTTCTCTCTGGGCTACATGTACTATGTGTTCCTGCAGGAAGTGGTCCCCAAAGGGCGTGTGGGTCCCGTTCAGCTGGCGGTTCTTACCTGCGGGTTATTTCTGATACTCTTAGCCTTGCACAGAGCCAAGAAGAATCCAGGCTACCTCAGCAATCCAGCAAGCGGTGACAGATCTCTAAGCAGCAGCCAGCTGGAGTGCCTGAGCAGAAAAGGGCAGGAGAAGACCAAAGGGTTCCCTGGGGCAGACATGTCGGGCAGTCTCAACAATCGCACAACAAAGGATGACCCCAAGGGCTCTTCCAAGATGCCAGCTGGAAGCCCCACCAAAGCGAAGGAGGACTGGTGTGCCAAGTGCCAGCTGGTGCGACCAGCCCGGGCATGGCACTGCCGGATATGTGGCATCTGTGTGAGGAGAATGGATCATCATTGTGTCTG
Seq C2 exon
GATAAATAGCTGCGTTGGAGAATCAAATCATCAAGCATTTATACTTGCCCTTTTGATCTTCTTGCTCACCTCGGTGTATGGGATCACACTGACCTTGGACACCATTTGTAGAGACAGAAGTGTCTTCACAGCTCTTTTCTATTGTCCTGGAGTTTATGCAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184307-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.107 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0152915=zf-DHHC=PU(52.1=46.2)
C2:
PF0152915=zf-DHHC=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATCATGACACAGAAGGGC
R:
TGTAATTTGCATAAACTCCAGGACA
Band lengths:
335-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)