Special

MmuALTA0020460-1/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000036304 | Zdhhc23
Description
zinc finger, DHHC domain containing 23 [Source:MGI Symbol;Acc:MGI:2685625]
Coordinates
chr16:43971512-43974279:-
Coord C1 exon
chr16:43973581-43974279
Coord A exon
NA
Coord C2 exon
chr16:43971512-43971568
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
ACCTTGAACACCATTTGTAGGGA
3' ss Score
4.61
Exon sequences
Seq C1 exon
CCCATGCTGGCACTCTGGTATTACTACCTCACTCACAGAAGGAAAGAACAGACGCTGTTTTTCCTGAGCCTCGGGCTGTTCTCACTGGGCTACATGTACTATGTGTTCCTGCGGGAAGTGGTCCCCCAAGGGCGCGTGGGGCCCACTCAGCTGGCCCTCCTAACCTGCGGGTTACTTCTGATACTCTTAGCCTTGTACCGAGCCAAGAAGAATCCAGGCTACCTCAGCAATGACAAATCCCCAAGCAACAGCCAAATTGAATGCCCGGTCAAAAAAGGGCAGGAGAAGACCAAAGGGTTCCCCGGCACAGACGCCTCGGGGAGCCTCAACAACCGCACACTGAAGGACGATGTTAGGGGTTCCTCCAGGGTGGGGCTTGACAGCCCTGCCAAAGTGAAGGAAGACTGGTGTGCCAAGTGCCAGCTAGTACGACCCGCCCGGGCATGGCATTGCCGGATATGCGGTATCTGTGTACGGAGAATGGACCATCATTGTGTCTG
Seq A exon
NA
Seq C2 exon
GGATAGAAGCCTCTTCACAGCCCTCTTCTACTGTCCTGGAGTTTACGCTAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036304-3-5,3-4,3-3-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.030 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0152915=zf-DHHC=PU(52.0=45.3)

							
A:
NA

							
C2:
PF0152915=zf-DHHC=FE(26.0=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000128650





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000044744
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr3:113956450-113956506 
ALTERNATIVE
HsaALTA1050712-1/3
(ZDHHC23)
Human
(hg19)
chr3:113675295-113675296 
Rat
(rn6)
chr11:61669957-61670013 
ALTERNATIVE
RnoALTA0045451-1/4
(Zdhhc23)
Cow
(bosTau6)
chr1:59071996-59071997 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr1:86363375-86363376 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGGGCAGGAGAAGACCAAAGG

				
R: 
AAGAGGGCTGTGAAGAGGCTT

				
Band lengths: 
252-354

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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