DreALTA0032701-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000105123 | zer1
Description
zyg-11 related, cell cycle regulator [Source:ZFIN;Acc:ZDB-GENE-040426-2307]
Coordinates
chr21:162460-162985:+
Coord C1 exon
chr21:162460-162633
Coord A exon
chr21:162770-162775
Coord C2 exon
chr21:162776-162985
Length
6 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGTG
3' ss Score
9.9
Exon sequences
Seq C1 exon
CTGGTGATCACGGCGCTGAAGACTCATAAGTATGATAAGAGTATCCAGGTGACGGGCAGCGCGGCTCTGTTCTACCTCACCAACACAGAGTACCGCGGTGAGCAGAGCGTGCGGCTGCGCAGACAGGTCATACAGGTGGTGCTCAACGGCATGGAGCATTACCAGGAGGTCACG
Seq A exon
GTGCAG
Seq C2 exon
AGGAACTGCTGCCTGACGCTGTGTAACTTCAGTATCCCGGAGGAGCTGGAGTTTCAGTACCGGCGTGTGAATCTGCTGCTGCTGAAGATCCTGGAGCCGCTGCGTCAGGACGAGTCCATCCAGCGCATCGCCGTACACCTGTGCAACGCTCTCGTCTGTCAGGTGGACAACGACCACAAGGAGGCGGTGGGGAAGATGGGCTTCGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105123-7-12,7-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGAGCATTACCAGGAGG
R:
TTCACACGCCGGTACTGAAAC
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]