HsaALTA0009673-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000160445 | ZER1
Description
zyg-11 related cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:30960]
Coordinates
chr9:128742578-128750789:-
Coord C1 exon
chr9:128750616-128750789
Coord A exon
chr9:128742740-128742745
Coord C2 exon
chr9:128742578-128742739
Length
6 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
3' ss Seq
TGTGTCCTGTCCCGGCCCAGGTG
3' ss Score
9.38
Exon sequences
Seq C1 exon
CTGGTCATCACGGCCCTCAAGTGCCACAAATATGACAGGAACATTCAAGTGACAGGCAGCGCCGCTCTCTTCTACCTAACAAATTCCGAGTACCGCTCAGAGCAGAGTGTGAAGCTGCGCCGGCAGGTTATCCAGGTGGTGCTGAATGGCATGGAATCCTACCAGGAGGTGACG
Seq A exon
GTGCAG
Seq C2 exon
CGGAACTGCTGCCTGACGCTCTGCAACTTCAGCATCCCCGAGGAGCTGGAATTCCAGTACCGCCGGGTCAACGAGCTCCTGCTCAGCATCCTCAACCCCACGCGGCAGGACGAGTCTATCCAGCGGATCGCCGTGCACCTGTGCAATGCCCTGGTCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160445-22-20,22-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=PU(9.7=36.2)
A:
NA
C2:
PF032249=V-ATPase_H_N=FE(32.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTATCCAGGTGGTGCTGA
R:
GAATTCCAGCTCCTCGGGGAT
Band lengths:
104-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development