DreALTA0033128-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000101093 | zgc:162971
Description
zgc:162971 [Source:ZFIN;Acc:ZDB-GENE-070424-48]
Coordinates
chr21:2164377-2170336:-
Coord C1 exon
chr21:2170156-2170336
Coord A exon
NA
Coord C2 exon
chr21:2164377-2164491
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CTCATCTTCCCACAGCTGAGGAA
3' ss Score
-5.72
Exon sequences
Seq C1 exon
TTTCAGGAAAATTAAAAAATATATTGGGATCCGCCAGTGGTGGTGCTCGAGCACCGAAAACAATGACGGACATTCGAGTCGACGAGAAGAAGAAGAAGAAGAGTGCGGTAAGAGTGTAAACAGAAGCGTAACAGCCGCTTGTGATGCTCTAAATCAGCTCTATTTATCACACTATAATCCT
Seq A exon
NA
Seq C2 exon
GAAGCAGCAAACAGGAGGAATTACAGCAGGAGAAAGAACTGACATACTGTAGTAAAGATGGAGATTGAGGAAGAACCCTGCAGAATAAAGGAGGAAGAGACAGAGGAACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101093-8-9,8-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.850
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCGCTTGTGATGCTCTAA
R:
TGTCAGTTCTTTCTCCTGCTGT
Band lengths:
94-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]