DreEX0087250 @ danRer10
Exon Skipping
Gene
ENSDARG00000101093 | zgc:162971
Description
zgc:162971 [Source:ZFIN;Acc:ZDB-GENE-070424-48]
Coordinates
chr21:2164377-2168683:-
Coord C1 exon
chr21:2168624-2168683
Coord A exon
chr21:2166497-2166696
Coord C2 exon
chr21:2164377-2164496
Length
200 bp
Sequences
Splice sites
3' ss Seq
TCTAACATGTACTTCTCAAGGTA
3' ss Score
5.64
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CACTCTTCCATCTGTTTTGTCTGCTTGGGTCACTGAGATTTCCTCTGGGTCAGGCTGCAG
Seq A exon
GTATGGTCACGAGAAATCCTGGAGAGGCAGTTTTAACATGGAGTGACACGACTTCTGACGTACAGATGCCACTGGCACATGCCCATAGATATATACACTAGATGTCGCCTGGCCTATTGTTGTCTATTGGACGGAATGCATCTAAAGCGCCGCCATCTTGCTACAGGGTAGCGCTCCTTTGAAATGAATGCGGGACCAAG
Seq C2 exon
CTGAGGAAGCAGCAAACAGGAGGAATTACAGCAGGAGAAAGAACTGACATACTGTAGTAAAGATGGAGATTGAGGAAGAACCCTGCAGAATAAAGGAGGAAGAGACAGAGGAACAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101093-'10-8,'10-7,11-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.850
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTTCCATCTGTTTTGTCTGC
R:
CTATTTGTTCCTCTGTCTCTTCCTCC
Band lengths:
180-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]