DreALTA0033614-2/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000061174 | znf740b
Description
zinc finger protein 740b [Source:ZFIN;Acc:ZDB-GENE-060929-660]
Coordinates
chr23:36315270-36319905:-
Coord C1 exon
chr23:36319165-36319905
Coord A exon
chr23:36315407-36315487
Coord C2 exon
chr23:36315270-36315406
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
AAGCAGTGATTTGTCCACAGATG
3' ss Score
4.85
Exon sequences
Seq C1 exon
AATTTTAAATTCAGGGAAAAAATGTTTACACTTACAAAACTTGCTCTTGTGAATATAAAATTTGTCCAACAAAAAAAAACAAGGTTCATGAAATAAGTCTTATTTTCCTTTTCACATTTATGGAAACCAAAGATAACATTCTTATATGTAAATTCAAAATCTGCCTTCACATAAACTTTTATCAAATCAAGAACATCACATCAAAATGCAATTAAATGAGGGAAATTCCAAAATAATCCTTTACCATCTTCCCAAATATGAAATAAACGTCAAATGTCGTAAGCAGCTCGACCTTTTACACGACAATGAAATCAAATCAAAAGGTCGTAGAGTTTGTTCACACCGGAAGTAGCCTGTGATTTGTTGCCTGCTCGGTGATCACGTGACACGCGCTCTCCCCAGAGAACACTTCCGGTAACGTTTCCTGTGTTTGTAAACTGAAGAAAAAAAAAATTGTCCGACAAGAAAATATTGGGCTACAATAAAAGACGAAGAGTAAG
Seq A exon
ATGACAGGTTCTGTTAGTGGTGGGCTGGATGTGTGGCAGCGTCAGACAGAGATGGATGTTACCCTGGCTTTCTGTTTCTAG
Seq C2 exon
GCTCGGGCCCCTGATGATTGGGGCTTGTGTGGTCTCTAAACATTGTCCCAGCCCAGAGCCCCAACACACACACACACACTCTCAGCACTGAGATGTCACACCATTCCAACAGCACAGTGCGAGATCACATGAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061174-0-5,0-4,0-3,0-2-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.800
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGTTGCCTGCTCGGTGAT
R:
TAGAGACCACACAAGCCCCAA
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]