DreEX0088298 @ danRer10
Exon Skipping
Gene
ENSDARG00000061174 | znf740b
Description
zinc finger protein 740b [Source:ZFIN;Acc:ZDB-GENE-060929-660]
Coordinates
chr23:36312857-36319905:-
Coord C1 exon
chr23:36319165-36319905
Coord A exon
chr23:36315270-36315406
Coord C2 exon
chr23:36312857-36313018
Length
137 bp
Sequences
Splice sites
3' ss Seq
CCCTGGCTTTCTGTTTCTAGGCT
3' ss Score
10.46
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
Exon sequences
Seq C1 exon
AATTTTAAATTCAGGGAAAAAATGTTTACACTTACAAAACTTGCTCTTGTGAATATAAAATTTGTCCAACAAAAAAAAACAAGGTTCATGAAATAAGTCTTATTTTCCTTTTCACATTTATGGAAACCAAAGATAACATTCTTATATGTAAATTCAAAATCTGCCTTCACATAAACTTTTATCAAATCAAGAACATCACATCAAAATGCAATTAAATGAGGGAAATTCCAAAATAATCCTTTACCATCTTCCCAAATATGAAATAAACGTCAAATGTCGTAAGCAGCTCGACCTTTTACACGACAATGAAATCAAATCAAAAGGTCGTAGAGTTTGTTCACACCGGAAGTAGCCTGTGATTTGTTGCCTGCTCGGTGATCACGTGACACGCGCTCTCCCCAGAGAACACTTCCGGTAACGTTTCCTGTGTTTGTAAACTGAAGAAAAAAAAAATTGTCCGACAAGAAAATATTGGGCTACAATAAAAGACGAAGAGTAAG
Seq A exon
GCTCGGGCCCCTGATGATTGGGGCTTGTGTGGTCTCTAAACATTGTCCCAGCCCAGAGCCCCAACACACACACACACACTCTCAGCACTGAGATGTCACACCATTCCAACAGCACAGTGCGAGATCACATGAAATGG
Seq C2 exon
GCTGGGTTGCTGGGCTGTGAAGCAGTGCTGTCCAGCATGGCACTCATGCAGGCCGGCTCAATGCCCAGCCATAGGAAGATGAGAGAAAGCAACCACAACCAGGACACACACAGCCAACACACACACATGGTGCTGCCCTCTGGAGTCAGCTGTCCACCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061174_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.800 C2=0.574
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCACACCGGAAGTAGCCTG
R:
TCATCTTCCTATGGCTGGGCA
Band lengths:
247-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]