DreALTD0000025-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61842802-61857132:+
Coord C1 exon
chr5:61842802-61842862
Coord A exon
chr5:61842863-61843315
Coord C2 exon
chr5:61857080-61857132
Length
453 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
TTTTCATGTTTGTCTTGCAGCTC
3' ss Score
12.03
Exon sequences
Seq C1 exon
AATCTGAAAGTTAAAGGTCCTAAGGAATCCAAGGACTGCACTGCAACCGCCACAATGGAGG
Seq A exon
GTAAGAGCATATCTGTTTATCTGCGATGAGTGATCCACGTTTGGGAGAATATAAATGCCTACTGTTAGAATGGGATTTATTGTATTGTTTGAGAGAATGGATGAGTGTGTATGTATGTATGAATGAGTGAGTGAGTGAGCGAGCGGTGTCTCTTTAAGAATGAGTTCAGCTCTGCATCTGTCTACTTGTGTATGCAGAGTCCACAACTCAACTGTGTGTGTGAGGAAGAGTGTGTGTGCTTGCTCATTCTGAGGGTTTGGAGAGCAGCAGTTCTCTCTCTCTCTCTCTCTCGCTCTCTCGTTCTGTCTTGGCGCTGTTTGTGAGGGACGGATAAAAAGGGGTGCAGAATGTGAAGGAAGTATTGAGAGAGCAGTTAGAGAAGACTGCAGGATCAGTGGAAGTTTGTCATGGAGGTGCTGCTGGTTCTCCGCTTGTGTTGTAACTGCACCTATG
Seq C2 exon
CTCTCCTCTACAAACCTATTGACCGGGTTACTCGAAGCACTCTAGTCCTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587-8-8,9-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(10.6=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]