RnoALTD0001454-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64612493-64616418:-
Coord C1 exon
chr10:64616244-64616418
Coord A exon
NA
Coord C2 exon
chr10:64612493-64612545
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACC
5' ss Score
5.31
3' ss Seq
CTTTCTCCGCCCTCCCACAGCTC
3' ss Score
10.93
Exon sequences
Seq C1 exon
GAAGCGGCTGCTTGATTCTGGAGGTTGTGCAGCAGCAGCCAGCAAGGTGGCCGAGTGGCTGGTCTGCTGAGGAGAGCCAGGAGCCTGGAGCAATGGCTGCAGGTCCCTGCTGCAAGGATAGAGGTTGCCATGGAAATCCTACTCATCATCCGCTTCTGCTGTGACTGCACCTATG
Seq A exon
NA
Seq C2 exon
CTCTGCTGTATAAGCCTATTGACCGAGTCACTCGGAGTACCCTGGTCCTGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-24-14,25-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PD(4.1=10.9)
A:
NA
C2:
PF0062115=RhoGEF=FE(9.0=100)
Main Inclusion Isoform:
ENSRNOT00000080703fB425
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTTGATTCTGGAGGTT
R:
GTGCAGGACCAGGGTACTCC
Band lengths:
223-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]