DreALTD0000075-2/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68213831-68216213:-
Coord C1 exon
chr5:68216183-68216213
Coord A exon
chr5:68216114-68216182
Coord C2 exon
chr5:68213831-68213909
Length
69 bp
Sequences
Splice sites
5' ss Seq
AGAGTACGA
5' ss Score
2.43
3' ss Seq
TCTCTGACTTGTTTTGTTAGGAA
3' ss Score
7.38
Exon sequences
Seq C1 exon
GCGAGGAGCTGCTGGGAAACGAGGGCGCCAG
Seq A exon
GTATTTGATGAAGATGGAGGACATAAAGGACCATGATGAGGATTTCCTTTCCCCCAAGAAAGTTCTAGA
Seq C2 exon
GAATCATTCTCCTGCTATCCCGAGGATCCCGTGTGTGTCTCCTGAGACTGTCATGCTGAAAGAGCATGAGATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093-24-30,25-30,26-30,27-30-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.648
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCTGCTGGGAAACGA
R:
TGCTCCATCTCATGCTCTTTCA
Band lengths:
107-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]