DreALTD0000686-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000043175 | CELA1 (5 of 7)
Description
chymotrypsin-like elastase family, member 1 [Source:HGNC Symbol;Acc:HGNC:3308]
Coordinates
chr22:7409830-7435918:+
Coord C1 exon
chr22:7409830-7409917
Coord A exon
NA
Coord C2 exon
chr22:7435818-7435918
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGCAGGT
5' ss Score
0.61
3' ss Seq
AATCATGTCTCTTTCTTCAGATC
3' ss Score
10.14
Exon sequences
Seq C1 exon
CCCTGGCTGAGCCCAGATATCTGGAGGAACAGATTGCTCAGGAGAGAGTTGTCGGTGGAGAAGTCGCAAGACCCAACTCTTGGCCCTG
Seq A exon
NA
Seq C2 exon
ATCTCTCTCCAGTACCAATCTGGTGGAAGATACCATCATTATTGTGGTGGGACTCTGATCAGACCAGGATGGGTGATGGTTGCCGCCCATTGCGTCGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043175-1-9,2-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=45.2)
A:
NA
C2:
PF0008921=Trypsin=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGTCGGTGGAGAAGTCG
R:
GGTCTGATCAGAGTCCCACCA
Band lengths:
108-112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]