DreEX0070771 @ danRer10
Exon Skipping
Gene
ENSDARG00000099295 | si:dkey-57c15.11
Description
si:dkey-57c15.11 [Source:ZFIN;Acc:ZDB-GENE-141222-47]
Coordinates
chr22:7409409-7412616:-
Coord C1 exon
chr22:7412374-7412616
Coord A exon
chr22:7411491-7411574
Coord C2 exon
chr22:7409409-7409743
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTTTAACCATCTAGAGA
3' ss Score
5.53
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTTCTGTTTACCCAGCAGCCACGTTGTTCCTGTTCCAGTTGGGGTGGATGTAGACATTGCTGACGGTCATGTACTGCTCACGGCCCTCCTGTTTGTAGATGTCGTGCTCACCGAGGACAACACGCCAAGTTCTTGAGCTACACAAGATGGAAGAAGAAATGTTAATTGTATACGGGCCTACTGCCTTTTCACATCCTTAATGTCGAAAGTGGTAAAAAGTCATTTGACAATAAATGAATGAAG
Seq A exon
AGACAAAAGACGTGGATTCCTTACGTATCAACGCAGTGAGCGGCGGTCAAAACAAAGTTCTGTTTGATCAGAGTTCCACCACAG
Seq C2 exon
AAAGAGAGAAAGATCTTACCCAAAGCGGCCAGCACACTCAACAACAGGATCCTCAGCATGTTTGCAGTCTTTCTGGACCTTCTGCACTCTGAGCTCCTCCATCATCCCTATATATACACACCCACAGACGGTCAAGCGGCGCTGGACACAACAGGTTTTCTGATGCTTACAGGTGTGTGAATCCCACCGATAACACCGGTGCCAAGGCCAGCGTGCCAGATGCAGAATAAGCAATTTTTTCTGCTTTGATAATGTTTAACCTGAATAAGTTAAACAATAAGTCTTATATACAGTAATGTAAAGTTTAAATAAATGCACACATTTTAACGCTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099295_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACAACACGCCAAGTTCT
R:
TCCTGTTGTTGAGTGTGCTGG
Band lengths:
180-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]