DreALTD0000806-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13468565-13473738:+
Coord C1 exon
chr1:13468565-13468656
Coord A exon
NA
Coord C2 exon
chr1:13471885-13473738
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGA
5' ss Score
3.11
3' ss Seq
GACCGATTTTTCTTTCACAGGAC
3' ss Score
10.4
Exon sequences
Seq C1 exon
GCTCTAAACTACTTTGGAGGTTTTAGGAAGGTGCAGATCCCTCGAGTTGTAGAGCAGGAAATACTGCAGCCTGATGGATCTGTGATCAGGAG
Seq A exon
NA
Seq C2 exon
GACGAGGATGCAGAAATCTAGAACCCACAGGAGATCAGCAGTGAGGGATGCTGGGGGACAGAAGCGGGTGTGTGTGGAGCAGATAGACGATCGGTCTGAGCCCCATGACAACCTACAGCATCACCTCCATCACCTCATTCACCGTTACTGTGCCCAAAACGACTGAGAGGAGGAGAGGGAGGAAGTGTGAGTTTATTAAAGGGTGCGATGGTTTCCCACTTCATTTTCCTCTCCCGACCTCCATCGCTCCTCTCTTTGAGCCTGTCCTAACCACTCCTATGCACCACGCTCATGCAATCCCAGAGTGCACTTCACTCCTGCCACTTCCAGTCTTCCTGTACAGTCAAACTGGACGTTTGCCCCGGTTTAAGACTATTTTATCGATCCTAACTCTCCCACAAGTGTTGTTTCCGTCTTTCATAGTGACCAAAGGGTATTCTTGCCTTTCCTTTGCTTTTTAAATCCCTCGGTTATTTAAATGATGAACACCGAAAATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026-64-62,65-62-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCGAGTTGTAGAGCAGGA
R:
AGCATCCCTCACTGCTGATCT
Band lengths:
106-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]