DreEX0003173 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13465876-13473738:+
Coord C1 exon
chr1:13465876-13466049
Coord A exon
chr1:13468565-13468656
Coord C2 exon
chr1:13471885-13473738
Length
92 bp
Sequences
Splice sites
3' ss Seq
TATATGCCTCATTCCCTTAGGCT
3' ss Score
8.35
5' ss Seq
GAGGTTTGA
5' ss Score
3.11
Exon sequences
Seq C1 exon
GTGACTTTCCATGAGAAAGACAGCATTTCGGCTTCAAGGGGGGAGTCTGCCGCTGGTCAAGAAGTCAGACAGATGGTCCAGACAACAGTGGTACATGGAGAACAGTTGGAAAAGCATGAGGGGAATCCATTCCTTGCCAGAGACTTGCCCTCTGCTCGGGATGACTTCACCCAG
Seq A exon
GCTCTAAACTACTTTGGAGGTTTTAGGAAGGTGCAGATCCCTCGAGTTGTAGAGCAGGAAATACTGCAGCCTGATGGATCTGTGATCAGGAG
Seq C2 exon
GACGAGGATGCAGAAATCTAGAACCCACAGGAGATCAGCAGTGAGGGATGCTGGGGGACAGAAGCGGGTGTGTGTGGAGCAGATAGACGATCGGTCTGAGCCCCATGACAACCTACAGCATCACCTCCATCACCTCATTCACCGTTACTGTGCCCAAAACGACTGAGAGGAGGAGAGGGAGGAAGTGTGAGTTTATTAAAGGGTGCGATGGTTTCCCACTTCATTTTCCTCTCCCGACCTCCATCGCTCCTCTCTTTGAGCCTGTCCTAACCACTCCTATGCACCACGCTCATGCAATCCCAGAGTGCACTTCACTCCTGCCACTTCCAGTCTTCCTGTACAGTCAAACTGGACGTTTGCCCCGGTTTAAGACTATTTTATCGATCCTAACTCTCCCACAAGTGTTGTTTCCGTCTTTCATAGTGACCAAAGGGTATTCTTGCCTTTCCTTTGCTTTTTAAATCCCTCGGTTATTTAAATGATGAACACCGAAAATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=0.290 C2=0.818
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTGGTCAAGAAGTCAGAC
R:
AGCATCCCTCACTGCTGATCT
Band lengths:
177-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]